Describing Function-based Approximations of Biomolecular Systems

Mathematical methods provide useful framework for the analysis and design of complex systems. In newer contexts such as biology, however, there is a need to both adapt existing methods as well as to develop new ones. Using a combination of analytical and computational approaches, we adapt and develop the method of describing functions to represent the input-output responses of biomolecular signaling systems. We approximate representative systems exhibiting various saturating and hysteretic dynamics in a way that is better than the standard linearization. Further, we develop analytical upper bounds for the computational error estimates. Finally, we use these error estimates to augment the limit cycle analysis with a simple and quick way to bound the predicted oscillation amplitude. These results provide system approximations that can provide more insight into the local behaviour of these systems, compute responses to other periodic inputs, and to analyze limit cycles.